Atomic‐Level Quality Assessment of Enzymes Encapsulated in Bioinspired Silica

Among protein immobilization strategies, encapsulation in bioinspired silica is increasingly popular. Encapsulation offers high yields and the solid support is created through a protein‐catalyzed polycondensation reaction that occurs under mild conditions. An integrated strategy is reported for the characterization of both the protein and bioinspired silica scaffold generated by the encapsulation of enzymes with an external silica‐forming promoter or with the promoter expressed as a fusion to the enzyme. This strategy is applied to the catalytic domain of matrix metalloproteinase 12. Analysis reveals that the structure of the protein encapsulated by either method is not significantly altered with respect to the native form. The structural features of silica obtained by either strategy are also similar, but differ from those obtained by other approaches. In case of the covalently linked R5–enzyme construct, immobilization yields are higher. Encapsulation through a fusion protein, therefore, appears to be the method of choice.     

Synthesis of 3-Acyl and 3-Carboalkoxyfurans by the Ceric Ammonium Nitrate Promoted Addition of 1,3-Dicarbonyl Compounds to Vinylic Acetates

3-Acyl- and 3-carboalkoxyfurans can be prepared in 30–55% yield by the oxidative addition of 1,3-dicarbonyl compounds to vinylic acetates induced by eerie ammonium nitrate.     

Light‐Induced Porphyrin‐Based Spectroscopic Ruler for Nanometer Distance Measurements

We present a novel pulsed electron paramagnetic resonance (EPR) spectroscopic ruler to test the performance of a recently developed spin‐labeling method based on the photoexcited triplet state (S=1). Four‐pulse electron double resonance (PELDOR) experiments are carried out on a series of helical peptides, labeled at the N‐terminal end with the porphyrin moiety, which can be excited to the triplet state, and with the nitroxide at various sequence positions, spanning distances in the range 1.8–8 nm. The PELDOR traces provide accurate distance measurements for all the ruler series, showing deep envelope modulations at frequencies varying in a progressive way according to the increasing distance between the spin labels. The upper limit is evaluated and found to be around 8 nm. The PELDOR‐derived distances are in excellent agreement with theoretical predictions. We demonstrate that high sensitivity is acquired using the triplet state as a spin label by comparison with Cu(II)–porphyrin analogues. The new labeling approach has a high potential for measuring nanometer distances in more complex biological systems due to the properties of the porphyrin triplet state.     

The Effect of the Molecular Size and Shape on the Volume Behavior of Binary Liquid Mixtures. Branched and Cyclic Alkanes in Heptane at 298.15 K

Excess molar volumes V ^E for 40 mixtures of heptane with a liquid alkane and apparent molar volumes in heptane for eight solid alkanes have been obtained at 298.15 K. They include five linear, 30 branched-chain, and 13 cyclic alkanes. Almost all systems exhibit negative V ^E values. For mixtures with open chain alkanes, V ^E increases from C5 to C7 and then decreases. A similar trend is shown by mixtures with cycloalkanes. V ^E values are compared with known H ^E data for mixtures with heptane and tetrachloromethane. Signs and trends of V ^E and H ^E are correlated with the free volume and interactional terms of the Flory theory. The partial molar volumes at infinite dilution in heptane, V°, have also been obtained and discussed together with literature data on other hydrocarbons and polar compounds. The calculated contributions to V° by CH₃, CH₂, CH and C groups are compared with previously determined contributions of polar groups. The lower contributions of the latter groups are explained with the volume contraction caused by dipole-induced dipole interaction. The volume effects associated with branching and cyclization have been evaluated and compared with the corresponding effects on solvation enthalpy. The branching effect, in the order of magnitude of few cm³·mol^?1, and the larger negative values of cyclization volumes, down to ?24 cm³·mol^?1, are discussed in terms of packing and solute–solvent interactions, in analogy to polar organic solutes either in heptane and tetrachloromethane. A negative cyclization effect is also exhibited by the solvation enthalpies.